BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018B10SP1|AL427272
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1309 1500 0.0
>3x_Contig1309
Length = 8998
Score = 1500 bits (751), Expect = 0.0
Identities = 783/797 (98%), Gaps = 2/797 (0%)
Strand = Plus / Minus
Query: 1 gatccaacgaaccggtgta-catcttctccatcatcggttttgattaactgcgacagact 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gatccaacgaaccggtgtaacatcttctccatcatcggttttgattaactgcgacagact 738
Query: 60 ggtgactttvagtttaactttgagctttgtcaactcagcctttaacctagtctgatgctt 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggtgactttaagtttaactttgagctttgtcaactcagcctttaacctagtctgatgctt 678
Query: 120 cavaatgavagttttgataggatgcttacccatctgaatccgcttcgattttgaaagtva 179
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 677 caaaatgaaagttttgataggatgcttacccatctgaatccgcttcgattttgaaagtaa 618
Query: 180 aaggtcgtgtactaggagccttatggtatccttattgaacagcggtttccctttcttttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaggtcgtgtactaggagccttatggtatccttattgaacagcggtttccctttcttttt 558
Query: 240 cggtacgtcctccaagatcccgctcttcttaatgatttthtctagatattccctatactg 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 cggtacgtcctccaagatcccgctcttcttaatgattttatctagatattccctatactg 498
Query: 300 ccatgtactactaacaatggcataaatgtgacgaggatttgtcttcagcttatatctttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccatgtactactaacaatggcataaatgtgacgaggatttgtcttcagcttatatctttt 438
Query: 360 acaactagtaagtcccaaggtctgtbacgaacctgcmactctcttgtctttagagagctc 419
||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 437 acaactagtaagtaccaaggtctgtaacgaacctgcaactctcttgtctttagagagctc 378
Query: 420 ctgttccacgaattccaatacccaggttgcatcacggtagacttccatctcgaatcacaa 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 377 ctgttccacgaattccaatacccaggttgcatcacggtagaattccatctcgaatcacaa 318
Query: 480 tgaagttaamatgaaaatccaatgavatagcgctgtatagcttgtaccacagatccagca 539
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 317 tgaagttaaaatgaaaatccaatgaaatagcgctgtatagcttgtaccacagatccagca 258
Query: 540 aaatcagttctaacacgtaactatattacgtctattctatacctcatcgcgatgagctct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatcagttctaacacgtaactatattacgtctattctatacctcatcgcgatgagctct 198
Query: 600 tgttacatgtttcttcatacgtattatacattttcaattttcagtacttgaagagtccga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgttacatgtttcttcatacgtattatacattttcaattttcagtacttgaagagtccga 138
Query: 660 tgttgaaaaataatttcttttctattgtcacctcagtttggttttctgtaaatattggaa 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgttgaaaaataatttcttttctattgtcacctcagtttggttttctgtaaatattggaa 78
Query: 720 ctttaaaacatcaacaatttcctgcgctcatggaaccatatgtg-aamagctgatcttca 778
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 77 ctttaaaacatcaacaatttcctgcgctcatggaaccatatgtgaaacagctgatcttca 18
Query: 779 tacggatcttctgagta 795
|||||||||||||||||
Sbjct: 17 tacggatcttctgagta 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6304
Number of Sequences: 1807
Number of extensions: 6304
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)